Coupling remote sensing and eDNA to monitor environmental impact: A pilot to quantify the environmental benefits of sustainable agriculture in the Brazilian Amazon.

Monitoring is essential to ensure that environmental goals are being achieved, including those of sustainable agriculture. Growing interest in environmental monitoring provides an opportunity to improve monitoring practices. Approaches that directly monitor land cover change and biodiversity annually by coupling the wall-to-wall coverage from remote sensing and the site-specific community composition from environmental DNA (eDNA) can provide timely, relevant results for parties interested in the success of sustainable agricultural practices. To ensure that the measured impacts are due to the environmental projects and not exogenous factors, sites where projects have been implemented should be benchmarked against counterfactuals (no project) and control (natural habitat) sites. Results can then be used to calculate diverse sets of indicators customized to monitor different projects. Here, we report on our experience developing and applying one such approach to assess the impact of shaded cocoa projects implemented by the Instituto de Manejo e Certificação Florestal e Agrícola (IMAFLORA) near São Félix do Xingu, in Pará, Brazil. We used the Continuous Degradation Detection (CODED) and LandTrendr algorithms to create a remote sensing-based assessment of forest disturbance and regeneration, estimate carbon sequestration, and changes in essential habitats. We coupled these remote sensing methods with eDNA analyses using arthropod-targeted primers by collecting soil samples from intervention and counterfactual pasture field sites and a control secondary forest. We used a custom set of indicators from the pilot application of a coupled monitoring framework called TerraBio. Our results suggest that, due to IMAFLORA's shaded cocoa projects, over 400 acres were restored in the intervention area and the community composition of arthropods in shaded cocoa is closer to second-growth forests than that of pastures. In reviewing the coupled approach, we found multiple aspects worked well, and we conclude by presenting multiple lessons learned.

Modeling seasonal water yield for landscape management: Applications in Peru and Myanmar.

A common objective of watershed management programs is to secure water supply, especially during the dry season. To develop such programs in contexts of low data and resource availability, program managers need tools to understand the effect of landscape management on the seasonal water balance. However, the performance of simple, parsimonious models is poorly understood. Here, we examine the behavior of a geospatial tool, developed to map monthly water budgets and baseflow contributions and forming part of the InVEST (integrated valuation of ecosystem services and trade-offs) software suite. The model uses monthly climate, topography, and land-use data to compute spatial indices of groundwater recharge, baseflow, and quickflow. We illustrate the model application in two large basins in Peru and Myanmar, where we compare results with observed data and alternative hydrologic models. We show that the spatial distribution of baseflow contributions correlated well with an established model in the Peruvian basin (r2 = 0.81 at the parcel scale). In Myanmar, the model shows an overall satisfactory performance for representing month to month variation (Nash-Sutcliffe-Efficiency 0.6-0.8); however, errors are scale dependent highlighting limitations in representing processes in large basins. Our study highlights modeling challenges, in particular trade-offs between model complexity and accuracy, and illustrates the role that parsimonious models can play to support watershed management programs.

Conservation gaps and priorities in the Tropical Andes biodiversity hotspot: Implications for the expansion of protected areas.

The Tropical Andes (TA) contain some of the most important and threatened areas for biodiversity conservation on earth. Despite the proportion of protected areas (PAs) that currently cover the TA, it is unknown if these areas are adequately protecting the biodiversity throughout the region and where the expansion of PAs is most needed to preserve biodiversity in the future. Here, we examine the conservation status of 1743 vertebrate species endemic to the TA (including mammals, birds, amphibians and reptiles), for which conservation actions should be prioritized within the region itself. Using species' geographical range maps, refined by their known elevational and habitat requirements, we carry out a gap analysis to examine to what degree endemic vertebrate species in the TA are represented by PAs. Then, using the irreplaceability-vulnerability framework, we localize first and second priority areas for conservation action, where important ecological features are subjected to severe anthropogenic disturbance. Our results show that 72% of all species and 90% of all threatened species are insufficiently covered by PAs. Furthermore, 73% of the first priority sites and 84% of the second priority sites are not covered by current PAs. These areas are predominantly located in the surroundings of major population centers in Ecuador and Colombia. To prevent species from extinction in the near future, actions to conserve their remaining habitat in prioritized areas are urgently required.

Land-use conflicts between biodiversity conservation and extractive industries in the Peruvian Andes.

The exceptional endemic species richness found in the Tropical Andes is being subjected to high rates of environmental degradation and natural resources exploitation. While many forms of land-cover change and other impacts on species are difficult to control through environmental regulations, governments usually determine how and where extractive industries can take place. This study examines potential conflict between the location of extractive industry activities and biodiversity conservation in the Peruvian Andes. Using geographic information systems, we carry out overlay analyses to determine the spatial congruence between mineral mining, hydrocarbon and logging concessions, on the one hand, and the distribution of protected areas and endemic vertebrate species on the other. The results show that regional protected areas extensively overlap with resource concessions. Furthermore, 16% of endemic species hotspots concur with current concessions, while the geographical distribution of 21 endemic vertebrate species overlap by more than 90% with concession areas. To reconcile conservation and economic development objectives in the future, the geographical distribution of biodiversity, and in particular of endemic species, needs to be considered in natural resources planning and land-use/management activities.

Hunters and hunting across indigenous and colonist communities at the forest-agriculture interface: an ethnozoological study from the Peruvian Amazon.

BACKGROUND: Wildlife has been traditionally used by forest communities as a source of protein, and the Peruvian Amazon is no exception. The articulation of colonist and indigenous communities to urban centers and markets results in changes in livelihood strategies and impacts on wildlife populations. To address the threat of overhunting and forest conversion, we provide a generalized characterization of colonist and indigenous communities and their hunting activities near Pucallpa, Ucayali, Peru. METHODS: A semi-structured household survey was conducted to characterize hunters and describe their prey collections. The data were analyzed by conducting a Kruskal-Wallis test, a multiple regression analysis, and by estimating the harvest rate (H). RESULTS: Less wealthy households were more actively engaged in hunting for food security and as a livelihood strategy. Additionally, older hunters were associated with higher hunting rates. Although the percentage of hunters was relatively low, estimated hunting rates suggest overharvesting of wildlife. Lowland pacas (Cuniculus paca) were the most frequently hunted prey, followed by red brocket deer (Mazama americana) and primates. While hunting intensity was not significantly different between indigenous and colonist communities, hunting rate disparities suggest there are different types of hunters (specialized vs. opportunistic) and that prey composition differs between communities. CONCLUSION: Close monitoring of wildlife populations and hunting activities is ideal for more accurately determining the impact of hunting on wildlife population and in turn on forest health. In lack of this type of information, this study provides insight of hunting as a shifting livelihood strategy in a rapidly changing environment at the forest/agriculture frontier.

Surface runoff and tile drainage transport of phosphorus in the midwestern United States.

The midwestern United States offers some of the most productive agricultural soils in the world. Given the cool humid climate, much of the region would not be able to support agriculture without subsurface (tile) drainage because high water tables may damage crops and prevent machinery usage in fields at critical times. Although drainage is designed to remove excess soil water as quickly as possible, it can also rapidly transport agrochemicals, including phosphorus (P). This paper illustrates the potential importance of tile drainage for P transport throughout the midwestern United States. Surface runoff and tile drainage from fields in the St. Joseph River Watershed in northeastern Indiana have been monitored since 2008. Although the traditional concept of tile drainage has been that it slowly removes soil matrix flow, peak tile discharge occurred at the same time as peak surface runoff, which demonstrates a strong surface connection through macropore flow. On our research fields, 49% of soluble P and 48% of total P losses occurred via tile discharge. Edge-of-field soluble P and total P areal loads often exceeded watershed-scale areal loadings from the Maumee River, the primary source of nutrients to the western basin of Lake Erie, where algal blooms have been a pervasive problem for the last 10 yr. As farmers, researchers, and policymakers search for treatments to reduce P loading to surface waters, the present work demonstrates that treating only surface runoff may not be sufficient to reach the goal of 41% reduction in P loading for the Lake Erie Basin.

Effect of replacing surface inlets with blind or gravel inlets on sediment and phosphorus subsurface drainage losses.

Open surface inlets that connect to subsurface tile drainage systems provide a direct pathway for movement of sediment, nutrients, and agrochemicals to surface waters. This study was conducted to determine the reduction in drainage effluent total suspended sediment (TSS) and phosphorus (P) concentrations and loads when open surface inlets were replaced with blind (in gravel capped with 30 cm of soil) or gravel (in very coarse sand/fine gravel) inlets. In Indiana, a pair of closed depressions in adjacent fields was fitted with open inlet tile risers and blind inlets in 2005 and monitored for flow and water chemistry. Paired comparisons on a storm event basis during the growing season for years 2006 to 2013 showed that TSS loads were 40.4 and 14.4 kg ha event for tile risers and blind inlets, respectively. Total P (TP) and soluble reactive P (SRP) loads were 66 and 50% less for the blind inlets, respectively. In Minnesota, TSS and SRP concentrations were monitored for 3 yr before and after modification of 24 open inlets to gravel inlets in an unreplicated large-field on-farm study. Median TSS concentrations were 97 and 8.3 mg L and median SRP concentrations were 0.099 and 0.064 mg L for the open inlet and gravel inlet periods, respectively. Median TSS and SRP concentrations were elevated for snowmelt vs. non-snowmelt seasons for open and gravel inlets. Both replacement designs reduced suspended sediment and P concentrations and loads. The Indiana study suggests blind inlets will be effective beyond a 10-yr service life.

Applicability of models to predict phosphorus losses in drained fields: a review.

Most phosphorus (P) modeling studies of water quality have focused on surface runoff loses. However, a growing number of experimental studies have shown that P losses can occur in drainage water from artificially drained fields. In this review, we assess the applicability of nine models to predict this type of P loss. A model of P movement in artificially drained systems will likely need to account for the partitioning of water and P into runoff, macropore flow, and matrix flow. Within the soil profile, sorption and desorption of dissolved P and filtering of particulate P will be important. Eight models are reviewed (ADAPT, APEX, DRAINMOD, HSPF, HYDRUS, ICECREAMDB, PLEASE, and SWAT) along with P Indexes. Few of the models are designed to address P loss in drainage waters. Although the SWAT model has been used extensively for modeling P loss in runoff and includes tile drain flow, P losses are not simulated in tile drain flow. ADAPT, HSPF, and most P Indexes do not simulate flow to tiles or drains. DRAINMOD simulates drains but does not simulate P. The ICECREAMDB model from Sweden is an exception in that it is designed specifically for P losses in drainage water. This model seems to be a promising, parsimonious approach in simulating critical processes, but it needs to be tested. Field experiments using a nested, paired research design are needed to improve P models for artificially drained fields. Regardless of the model used, it is imperative that uncertainty in model predictions be assessed.

Analysis of effectiveness of three forest interventionist techniques and proposal of a new and integrated model of forest restoration.

We assessed the efficacy of three different forest intervention techniques, in terms of phytosociological and edaphic responses, that were implemented in 2007. In a farm where trees are planted and managed for cellulose production as well as set aside for environmental conservation, four stands were analysed: three of them were considered degraded and were managed using different intervention techniques (transposition, perch, and abandonment), and a fourth stand comprising pristine vegetation was considered a control (reference). Floristic and phytosociology data were collected in three 10 × 10 m plots established in each stand. Also, a total of 48 soil samples were collected to analyse physical and chemical attributes of the topsoil for the different stands. In terms of biodiversity, all the treatments showed significantly lower values when compared to the reference area. However, the soils in all the treatment and reference stands are similar in terms of physical and chemical attributes. Taking into account the specificities of each restoration technique, we verified that the integrated use of a set of management practices, constituted by the (1) abandonment of the area and (2) following a selective killing of the eucalyptus, is the most suitable and promising model to provide fast and effective restoration in terms of environmental indicators.

Phosphorus losses from monitored fields with conservation practices in the Lake Erie Basin, USA.

Conservation practices are implemented on farm fields in the USA through Farm Bill programs; however, there is a need for greater verification that these practices provide environmental benefits (e.g., water quality). This study was conducted to assess the impact of Farm Bill eligible conservation practices on soluble P (SP) and total P (TP) losses from four fields that were monitored between 2004 and 2013. No-tillage doubled SP loading compared to rotational tillage (e.g., tilled only before planting corn); however, no-tillage decreased TP loading by 69 % compared to rotational tillage. Similarly, grassed waterways were shown to increase SP loads, but not TP loads. A corn-soybean-wheat-oat rotation reduced SP loads by 85 % and TP loads by 83 % compared to the standard corn-soybean rotation in the region. We can potentially attain TP water quality goals using these Farm Bill practices; however, additional strategies must be employed to meet these goals for SP.